If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ), 'gf_id' => 'HOM05D000611', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000611' ), 'data_identifier' => 'HOM05D000611', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000611', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34890' => 'bna', 'A04p14120' => 'bna', 'A04p21500' => 'bna', 'A06p06380' => 'bna', 'A07p18950' => 'bna', 'A08p34400' => 'bna', 'A09p03150' => 'bna', 'A09p54650' => 'bna', 'A10p29650' => 'bna', 'Aa31LG1G5290' => 'aar', 'Aa31LG1G6150' => 'aar', 'Aa31LG2G5660' => 'aar', 'Aa31LG5G23450' => 'aar', 'Aa31LG5G7840' => 'aar', 'Aa31LG9G18060' => 'aar', 'Aa31LG9G780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1926' => 'aag', 'Actinidia03726' => 'ach', 'Actinidia03940' => 'ach', 'Actinidia06774' => 'ach', 'Actinidia07138' => 'ach', 'Actinidia12925' => 'ach', 'Actinidia17227' => 'ach', 'Actinidia19625' => 'ach', 'Actinidia22792' => 'ach', 'Actinidia24104' => 'ach', 'Actinidia27007' => 'ach', 'Actinidia29627' => 'ach', 'Actinidia33830' => 'ach', 'Actinidia33831' => 'ach', 'Actinidia36231' => 'ach', 'Actinidia36368' => 'ach', 'Actinidia37799' => 'ach', 'Actinidia38282' => 'ach', 'Ah.01g002980' => 'amhyb', 'Ah.01g013110' => 'amhyb', 'Ah.02g115200' => 'amhyb', 'Ah.02g119550' => 'amhyb', 'Ah.04g160100' => 'amhyb', 'Ah.07g200040' => 'amhyb', 'Ah.08g222560' => 'amhyb', 'AL1G20250' => 'aly', 'AL4G21650' => 'aly', 'AL5G45580' => 'aly', 'AL7G48480' => 'aly', 'Aqoxy1G00003' => 'aox', 'Aqoxy1G00542' => 'aox', 'Aqoxy2G03111' => 'aox', 'Aqoxy3G00114' => 'aox', 'Aqoxy3G00859' => 'aox', 'Aqoxy3G01690' => 'aox', 'Aqoxy5G01370' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1QGT1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QGX3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22IEAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YZ8WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70YL0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L2LXX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9S4ZX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KTAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D58B9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX8RYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9G7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0NWTD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FBT475' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Y46R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDGD4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHVF5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7PSRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI5RS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8EXIK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU19K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9I06G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS5TVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WP7UDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY3AB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF5F1Y' => 'arhy', 'AT1G09700' => 'ath', 'AT2G28380' => 'ath', 'AT3G26932' => 'ath', 'AT3G62800' => 'ath', 'AT5G41070' => 'ath', 'ATR0048G045' => 'atr', 'ATR0582G292' => 'atr', 'ATR0598G054' => 'atr', 'ATR0598G265' => 'atr', 'ATR0697G034' => 'atr', 'ATR0706G223' => 'atr', 'ATR0767G065' => 'atr', 'Atru.chr1.1837' => 'acertr', 'Atru.chr13.1000' => 'acertr', 'Atru.chr2.1464' => 'acertr', 'Atru.chr2.645' => 'acertr', 'Atru.chr3.3016' => 'acertr', 'Atru.chr3.3017' => 'acertr', 'Atru.chr3.3020' => 'acertr', 'Atru.chr3.3618' => 'acertr', 'Atru.chr3.3621' => 'acertr', 'Atru.chr4.2757' => 'acertr', 'Atru.chr6.2616' => 'acertr', 'AUR62000946' => 'cqu', 'AUR62001594' => 'cqu', 'AUR62003391' => 'cqu', 'AUR62005024' => 'cqu', 'AUR62007234' => 'cqu', 'AUR62012480' => 'cqu', 'AUR62018766' => 'cqu', 'AUR62020186' => 'cqu', 'AUR62023184' => 'cqu', 'AUR62023231' => 'cqu', 'AUR62024963' => 'cqu', 'AUR62029436' => 'cqu', 'AUR62036263' => 'cqu', 'AUR62039714' => 'cqu', 'AUR62042191' => 'cqu', 'BcaB02g07913' => 'bca', 'BcaB04g19414' => 'bca', 'BcaB06g27591' => 'bca', 'BcaB06g28210' => 'bca', 'BcaB07g30201' => 'bca', 'BcaC02g08181' => 'bca', 'BcaC03g17405' => 'bca', 'BcaC07g40761' => 'bca', 'BcaC07g42732' => 'bca', 'BolC2t11424H' => 'bol', 'BolC4t23804H' => 'bol', 'BolC4t26406H' => 'bol', 'BolC4t27274H' => 'bol', 'BolC5t29529H' => 'bol', 'BolC8t48941H' => 'bol', 'BolC8t51335H' => 'bol', 'BolC9t53258H' => 'bol', 'BraA02t08496Z' => 'bra', 'BraA04t17073Z' => 'bra', 'BraA04t17716Z' => 'bra', 'BraA06t23849Z' => 'bra', 'BraA07t29600Z' => 'bra', 'BraA08t35352Z' => 'bra', 'BraA09t35954Z' => 'bra', 'BraA09t40876Z' => 'bra', 'BraA10t45006Z' => 'bra', 'C02p53570' => 'bna', 'C04p23100' => 'bna', 'C04p48160' => 'bna', 'C04p57530' => 'bna', 'C05p07780' => 'bna', 'C08p13130' => 'bna', 'C08p37550' => 'bna', 'C09p03370' => 'bna', 'CAN.G1061.46' => 'can', 'CAN.G1129.18' => 'can', 'CAN.G245.2' => 'can', 'CAN.G245.3' => 'can', 'CAN.G475.15' => 'can', 'CAN.G631.30' => 'can', 'CAN.G694.85' => 'can', 'CAN.G794.12' => 'can', 'CANSAT21G1807' => 'cansat', 'CANSAT25G3146' => 'cansat', 'CANSAT54G1129' => 'cansat', 'CANSAT54G1952' => 'cansat', 'CANSAT64G1791' => 'cansat', 'CANSAT78G0822' => 'cansat', 'CANSAT78G1071' => 'cansat', 'CARHR009670' => 'chi', 'CARHR121330' => 'chi', 'CARHR148080' => 'chi', 'CARHR173070' => 'chi', 'CARHR206460' => 'chi', 'CARHR213300' => 'chi', 'Carub.0001s0904' => 'cru', 'Carub.0004s0930' => 'cru', 'Carub.0005s0508' => 'cru', 'Carub.0005s2946' => 'cru', 'Carub.0007s3442' => 'cru', 'Ca_01408_v3' => 'car', 'Ca_05859_v3' => 'car', 'Ca_05862_v3' => 'car', 'Ca_09394_v3' => 'car', 'Ca_13025_v3' => 'car', 'Ca_16008_v3' => 'car', 'Ca_16263_v3' => 'car', 'Ca_19263_v3' => 'car', 'Ca_19265_v3' => 'car', 'Ca_25690_v3' => 'car', 'Ca_25691_v3' => 'car', 'CBR_g34933' => 'cbr', 'CBR_g8357' => 'cbr', 'Cc00_g06240' => 'ccan', 'Cc00_g12870' => 'ccan', 'Cc01_g06710' => 'ccan', 'Cc02_g11350' => 'ccan', 'Cc02_g11360' => 'ccan', 'Cc03_g02330' => 'ccan', 'Cc04_g06500' => 'ccan', 'Cc04_g06510' => 'ccan', 'Cc06_g07300' => 'ccan', 'Cc07_g08100' => 'ccan', 'Cc10_g15960' => 'ccan', 'CDE02G1665' => 'cde', 'CDE02G4543' => 'cde', 'CDE06G1088' => 'cde', 'CDE08G0543' => 'cde', 'CDE09G0890' => 'cde', 'CDE10G0073' => 'cde', 'Cfa006493' => 'cfa', 'Cfa007195' => 'cfa', 'Cfa007833' => 'cfa', 'Cfa008667' => 'cfa', 'Cfa009035' => 'cfa', 'Cfa010236' => 'cfa', 'Cfa013806' => 'cfa', 'Ciclev10000716m.g' => 'ccl', 'Ciclev10001318m.g' => 'ccl', 'Ciclev10006777m.g' => 'ccl', 'Ciclev10010802m.g' => 'ccl', 'Ciclev10011836m.g' => 'ccl', 'Ciclev10016468m.g' => 'ccl', 'Ciclev10018273m.g' => 'ccl', 'Ciclev10020214m.g' => 'ccl', 'Ciclev10028358m.g' => 'ccl', 'CiPaw.03G004500' => 'cil', 'CiPaw.04G003100' => 'cil', 'CiPaw.07G009900' => 'cil', 'CiPaw.07G010100' => 'cil', 'CiPaw.08G056200' => 'cil', 'CiPaw.09G165000' => 'cil', 'CiPaw.13G113700' => 'cil', 'CiPaw.14G081000' => 'cil', 'CiPaw.15G093300' => 'cil', 'ClCG01G013680' => 'cla', 'ClCG05G011010' => 'cla', 'ClCG08G011620' => 'cla', 'ClCG10G013620' => 'cla', 'COL.COLO4_13313' => 'col', 'COL.COLO4_13629' => 'col', 'COL.COLO4_15730' => 'col', 'COL.COLO4_18328' => 'col', 'COL.COLO4_25321' => 'col', 'COL.COLO4_28606' => 'col', 'COL.COLO4_35256' => 'col', 'Cpa.g.c29936.3' => 'cpa', 'Cpa.g.c34457.2' => 'cpa', 'Cpa.g.sc117.33' => 'cpa', 'Cpa.g.sc161.9' => 'cpa', 'Cpa.g.sc216.1' => 'cpa', 'Cpa.g.sc70.106' => 'cpa', 'CsaV3_1G014030' => 'csa', 'CsaV3_3G021570' => 'csa', 'CsaV3_3G043040' => 'csa', 'CSS0001405' => 'camsi', 'CSS0007332' => 'camsi', 'CSS0009400' => 'camsi', 'CSS0013456' => 'camsi', 'CSS0013647' => 'camsi', 'CSS0014938' => 'camsi', 'CSS0015038' => 'camsi', 'CSS0015543' => 'camsi', 'CSS0024082' => 'camsi', 'CSS0026912' => 'camsi', 'CSS0033045' => 'camsi', 'CSS0037318' => 'camsi', 'CSS0039210' => 'camsi', 'CSS0041592' => 'camsi', 'CSS0050254' => 'camsi', 'DCAR_002572' => 'dca', 'DCAR_003177' => 'dca', 'DCAR_006437' => 'dca', 'DCAR_006438' => 'dca', 'DCAR_009081' => 'dca', 'DCAR_012285' => 'dca', 'DCAR_012287' => 'dca', 'DCAR_017284' => 'dca', 'DCAR_018805' => 'dca', 'DCAR_019319' => 'dca', 'DCAR_025872' => 'dca', 'Dinv03357' => 'din', 'Dinv04271' => 'din', 'Dinv05571' => 'din', 'Dinv08186' => 'din', 'Dinv14884' => 'din', 'Dinv19017' => 'din', 'Dinv25107' => 'din', 'Dinv26577' => 'din', 'Dinv31324' => 'din', 'Dinv32137' => 'din', 'Dinv32739' => 'din', 'Dinv36443' => 'din', 'Dinv42604' => 'din', 'Dinv44424' => 'din', 'Dinv44867' => 'din', 'Duzib041G0784' => 'dzi', 'Duzib052G1046' => 'dzi', 'Duzib093G1834' => 'dzi', 'Duzib128G0228' => 'dzi', 'Duzib128G1685' => 'dzi', 'Duzib133G1511' => 'dzi', 'Duzib147G1528' => 'dzi', 'Duzib150G1571' => 'dzi', 'Duzib168G2209' => 'dzi', 'Duzib168G2355' => 'dzi', 'Duzib170G1091' => 'dzi', 'Duzib177G0464' => 'dzi', 'Duzib187G0661' => 'dzi', 'Duzib211G0073' => 'dzi', 'Duzib264G0217' => 'dzi', 'ECA232G4037' => 'eca', 'ECA233G3208' => 'eca', 'ECA233G4708' => 'eca', 'ECA238G1988' => 'eca', 'ECA238G4608' => 'eca', 'ECA240G2968' => 'eca', 'ECA247G2790' => 'eca', 'ECA248G2576' => 'eca', 'EL10Ac1g01296' => 'bvu', 'EL10Ac2g02837' => 'bvu', 'EL10Ac2g02838' => 'bvu', 'EL10Ac2g02839' => 'bvu', 'EL10Ac2g02840' => 'bvu', 'EL10Ac2g04473' => 'bvu', 'EL10Ac4g09222' => 'bvu', 'EL10Ac5g11756' => 'bvu', 'EL10Ac5g12190' => 'bvu', 'EL10Ac6g15454' => 'bvu', 'EL10Ac7g16245' => 'bvu', 'EL10Ac8g20013' => 'bvu', 'EL10Ac8g20014' => 'bvu', 'EL10Ac9g22530' => 'bvu', 'EL10Ac9g22897' => 'bvu', 'Eucgr.B01706' => 'egr', 'Eucgr.B01707' => 'egr', 'Eucgr.B02503' => 'egr', 'Eucgr.F02155' => 'egr', 'Eucgr.H03360' => 'egr', 'Eucgr.H04415' => 'egr', 'Eucgr.J00927' => 'egr', 'Eucgr.J01547' => 'egr', 'Eucgr.J01631' => 'egr', 'Eucgr.K01507' => 'egr', 'FAN02G1646' => 'fan', 'FAN04G0691' => 'fan', 'FAN04G1308' => 'fan', 'FAN05G0188' => 'fan', 'FAN05G4949' => 'fan', 'FAN08G1902' => 'fan', 'FAN09G1078' => 'fan', 'FAN09G1497' => 'fan', 'FAN11G0993' => 'fan', 'FAN11G1434' => 'fan', 'FAN11G3944' => 'fan', 'FAN13G1678' => 'fan', 'FAN14G4243' => 'fan', 'FAN14G4558' => 'fan', 'FAN16G2754' => 'fan', 'FAN18G2075' => 'fan', 'FAN19G1640' => 'fan', 'FAN21G3051' => 'fan', 'FAN21G3967' => 'fan', 'FAN23G0451' => 'fan', 'FAN25G2314' => 'fan', 'FAN25G3834' => 'fan', 'FvH4_1g25060' => 'fve', 'FvH4_3g27052' => 'fve', 'FvH4_3g27780' => 'fve', 'FvH4_3g32200' => 'fve', 'FvH4_5g35180' => 'fve', 'FvH4_6g04080' => 'fve', 'FvH4_6g04510' => 'fve', 'FvH4_6g26590' => 'fve', 'FvH4_6g53980' => 'fve', 'Glyma.02G246100' => 'gma', 'Glyma.03G243600' => 'gma', 'Glyma.04G095700' => 'gma', 'Glyma.04G146300' => 'gma', 'Glyma.05G090000' => 'gma', 'Glyma.06G097400' => 'gma', 'Glyma.08G313900' => 'gma', 'Glyma.11G145900' => 'gma', 'Glyma.11G217600' => 'gma', 'Glyma.12G075700' => 'gma', 'Glyma.12G172100' => 'gma', 'Glyma.13G325600' => 'gma', 'Glyma.14G069800' => 'gma', 'Glyma.18G101001' => 'gma', 'Glyma.18G266267' => 'gma', 'Glyma.18G266333' => 'gma', 'Glyma.19G241100' => 'gma', 'Gohir.A03G033332' => 'ghi', 'Gohir.A03G033400' => 'ghi', 'Gohir.A05G219100' => 'ghi', 'Gohir.A06G032000' => 'ghi', 'Gohir.A08G198300' => 'ghi', 'Gohir.A09G052128' => 'ghi', 'Gohir.A11G257300' => 'ghi', 'Gohir.A12G056200' => 'ghi', 'Gohir.A13G097600' => 'ghi', 'Gohir.A13G171525' => 'ghi', 'Gohir.D03G134900' => 'ghi', 'Gohir.D05G221800' => 'ghi', 'Gohir.D06G031200' => 'ghi', 'Gohir.D06G041233' => 'ghi', 'Gohir.D07G118900' => 'ghi', 'Gohir.D08G215700' => 'ghi', 'Gohir.D09G052906' => 'ghi', 'Gohir.D11G187266' => 'ghi', 'Gohir.D11G267200' => 'ghi', 'Gohir.D12G055600' => 'ghi', 'Gohir.D13G102300' => 'ghi', 'Gohir.D13G177000' => 'ghi', 'Gorai.001G127900' => 'gra', 'Gorai.003G142000' => 'gra', 'Gorai.004G229300' => 'gra', 'Gorai.006G056800' => 'gra', 'Gorai.007G287000' => 'gra', 'Gorai.008G058500' => 'gra', 'Gorai.009G229100' => 'gra', 'Gorai.010G034400' => 'gra', 'Gorai.010G046100' => 'gra', 'Gorai.013G114500' => 'gra', 'Gorai.013G202400' => 'gra', 'GSVIVG01009189001' => 'vvi', 'GSVIVG01017799001' => 'vvi', 'GSVIVG01021904001' => 'vvi', 'GSVIVG01025192001' => 'vvi', 'GSVIVG01029969001' => 'vvi', 'GSVIVG01030843001' => 'vvi', 'GSVIVG01033035001' => 'vvi', 'HanXRQChr01g0004951' => 'han', 'HanXRQChr01g0013841' => 'han', 'HanXRQChr01g0019711' => 'han', 'HanXRQChr02g0046201' => 'han', 'HanXRQChr08g0218911' => 'han', 'HanXRQChr09g0248961' => 'han', 'HanXRQChr09g0262221' => 'han', 'HanXRQChr11g0348881' => 'han', 'HanXRQChr13g0396811' => 'han', 'HanXRQChr15g0496941' => 'han', 'HanXRQChr16g0532921' => 'han', 'Haze_04296' => 'cav', 'Haze_12064' => 'cav', 'Haze_14232' => 'cav', 'Haze_14913' => 'cav', 'Haze_20458' => 'cav', 'Haze_22470' => 'cav', 'Haze_23631' => 'cav', 'Haze_23818' => 'cav', 'Hma1.2p1_0058F.1_g032470' => 'hma', 'Hma1.2p1_0083F.1_g042630' => 'hma', 'Hma1.2p1_0125F.1_g058780' => 'hma', 'Hma1.2p1_0125F.1_g058793' => 'hma', 'Hma1.2p1_0125F.1_g058800' => 'hma', 'Hma1.2p1_0283F.1_g113480' => 'hma', 'Hma1.2p1_0382F.1_g140090' => 'hma', 'Hma1.2p1_0525F.1_g172650' => 'hma', 'Hma1.2p1_0768F.1_g215620' => 'hma', 'Hma1.2p1_0832F.1_g225560' => 'hma', 'Hma1.2p1_1288F.1_g273320' => 'hma', 'Hma1.2p1_1675F.1_g296970' => 'hma', 'HPP92_001900' => 'vpl', 'HPP92_007793' => 'vpl', 'HPP92_009716' => 'vpl', 'HPP92_011381' => 'vpl', 'HPP92_014716' => 'vpl', 'HPP92_017181' => 'vpl', 'HPP92_020749' => 'vpl', 'HPP92_022997' => 'vpl', 'HPP92_026244' => 'vpl', 'Hund01362' => 'sun', 'Hund10768' => 'sun', 'Hund12832' => 'sun', 'Hund16210' => 'sun', 'Hund22087' => 'sun', 'Hund26765' => 'sun', 'Lalb_Chr01g0004311' => 'lal', 'Lalb_Chr02g0154471' => 'lal', 'Lalb_Chr02g0157271' => 'lal', 'Lalb_Chr03g0027381' => 'lal', 'Lalb_Chr11g0064911' => 'lal', 'Lalb_Chr11g0075021' => 'lal', 'Lalb_Chr14g0364631' => 'lal', 'Lalb_Chr18g0045271' => 'lal', 'Lalb_Chr18g0053361' => 'lal', 'Lalb_Chr19g0133021' => 'lal', 'Lalb_Chr19g0133031' => 'lal', 'Lalb_Chr19g0137221' => 'lal', 'Lalb_Chr20g0116941' => 'lal', 'Lalb_Chr21g0317261' => 'lal', 'Lj1A1057G22' => 'lonja', 'Lj1A193G23' => 'lonja', 'Lj1A913G52' => 'lonja', 'Lj1C1056G10' => 'lonja', 'Lj1g0014888' => 'lja', 'Lj1g0027819' => 'lja', 'Lj2C1043G1' => 'lonja', 'Lj2C893G4' => 'lonja', 'Lj2g0007530' => 'lja', 'Lj2g0020896' => 'lja', 'Lj2g0026825' => 'lja', 'Lj3g0016053' => 'lja', 'Lj3g0023520' => 'lja', 'Lj4A87T46' => 'lonja', 'Lj6g0006818' => 'lja', 'Lj6g0018938' => 'lja', 'Lj6g0027718' => 'lja', 'Lj7A613G62' => 'lonja', 'Lj9A409T93' => 'lonja', 'Lj9A673T48' => 'lonja', 'Lj9A673T49' => 'lonja', 'LjContig00141g0016319' => 'lja', 'Lsat_1_v5_gn_1_1860' => 'lsa', 'Lsat_1_v5_gn_1_56161' => 'lsa', 'Lsat_1_v5_gn_2_112300' => 'lsa', 'Lsat_1_v5_gn_3_114521' => 'lsa', 'Lsat_1_v5_gn_3_114541' => 'lsa', 'Lsat_1_v5_gn_6_45841' => 'lsa', 'Lsat_1_v5_gn_8_18880' => 'lsa', 'Lsat_1_v5_gn_9_69201' => 'lsa', 'Manes.01G116100' => 'mes', 'Manes.04G020200' => 'mes', 'Manes.05G190000' => 'mes', 'Manes.08G126201' => 'mes', 'Manes.09G138400' => 'mes', 'Manes.09G158800' => 'mes', 'Manes.11G080400' => 'mes', 'Manes.11G145900' => 'mes', 'Mapoly0146s0045' => 'mpo', 'Mapoly0369s0002' => 'mpo', 'MBI07_g19305_MAGBIO' => 'mbi', 'MBI10_g08554_MAGBIO' => 'mbi', 'MBI10_g30301_MAGBIO' => 'mbi', 'MBI11_g29308_MAGBIO' => 'mbi', 'MBI11_g45238_MAGBIO' => 'mbi', 'MBI16_g12476_MAGBIO' => 'mbi', 'MBI16_g23759_MAGBIO' => 'mbi', 'MBI18_g19951_MAGBIO' => 'mbi', 'MBI19_g13629_MAGBIO' => 'mbi', 'MD03G1118400' => 'mdo', 'MD04G1216700' => 'mdo', 'MD09G1006600' => 'mdo', 'MD09G1243600' => 'mdo', 'MD09G1262200' => 'mdo', 'MD11G1136700' => 'mdo', 'MD11G1178800' => 'mdo', 'MD12G1233300' => 'mdo', 'MD15G1387000' => 'mdo', 'MD17G1010500' => 'mdo', 'MD17G1235600' => 'mdo', 'MD17G1257100' => 'mdo', 'Medtr2g094490' => 'mtr', 'Medtr3g079650' => 'mtr', 'Medtr3g079670' => 'mtr', 'Medtr3g079700' => 'mtr', 'Medtr3g079720' => 'mtr', 'Medtr3g100120' => 'mtr', 'Medtr4g007820' => 'mtr', 'Medtr4g058990' => 'mtr', 'Medtr5g079480' => 'mtr', 'Medtr5g079490' => 'mtr', 'Medtr6g028020' => 'mtr', 'Medtr6g092580' => 'mtr', 'Medtr6g092600' => 'mtr', 'Medtr7g114310' => 'mtr', 'Medtr8g045010' => 'mtr', 'MELO3C004886.2' => 'cme', 'MELO3C011081.2' => 'cme', 'MELO3C020280.2' => 'cme', 'MELO3C026605.2' => 'cme', 'Migut.D02443' => 'egut', 'Migut.D02444' => 'egut', 'Migut.F00033' => 'egut', 'Migut.F01986' => 'egut', 'Migut.J00764' => 'egut', 'Migut.L00463' => 'egut', 'Migut.N02423' => 'egut', 'Migut.N02598' => 'egut', 'MSTRG.15320' => 'ama', 'MSTRG.17798' => 'ama', 'MSTRG.18662' => 'ama', 'MSTRG.18759' => 'ama', 'MSTRG.19353' => 'ama', 'MSTRG.21040' => 'ama', 'MSTRG.27470' => 'ama', 'MSTRG.9174' => 'ama', 'Nitab4.5_0000098g0090' => 'nta', 'Nitab4.5_0000131g0140' => 'nta', 'Nitab4.5_0000428g0420' => 'nta', 'Nitab4.5_0000476g0060' => 'nta', 'Nitab4.5_0000534g0020' => 'nta', 'Nitab4.5_0001053g0030' => 'nta', 'Nitab4.5_0001606g0050' => 'nta', 'Nitab4.5_0001986g0090' => 'nta', 'Nitab4.5_0002664g0080' => 'nta', 'Nitab4.5_0003360g0040' => 'nta', 'Nitab4.5_0004028g0020' => 'nta', 'Nitab4.5_0004624g0040' => 'nta', 'Nitab4.5_0006151g0040' => 'nta', 'Nitab4.5_0007747g0020' => 'nta', 'Nitab4.5_0009985g0030' => 'nta', 'Nitab4.5_0010684g0010' => 'nta', 'Nn2g10801' => 'nnu', 'Nn2g13101' => 'nnu', 'Nn3g16354' => 'nnu', 'Nn3g20745' => 'nnu', 'Nn4g22211' => 'nnu', 'Nn4g24174' => 'nnu', 'Nn4g25992' => 'nnu', 'Nn5g27540' => 'nnu', 'Nn6g32381' => 'nnu', 'Oeu002374.1' => 'oeu', 'Oeu022346.1' => 'oeu', 'Oeu029558.1' => 'oeu', 'Oeu030189.1' => 'oeu', 'Oeu033860.1' => 'oeu', 'Oeu035262.1' => 'oeu', 'Oeu035437.1' => 'oeu', 'Oeu043922.1' => 'oeu', 'Oeu062523.1' => 'oeu', 'Oeu062888.1' => 'oeu', 'Os01g0772000' => 'osa', 'Os05g0150400' => 'osa', 'Os05g0307400' => 'osa', 'Os08g0384100' => 'osa', 'Os09g0331900' => 'osa', 'Os09g0508500' => 'osa', 'Os10g0480500' => 'osa', 'Os11g0109900' => 'osa', 'Os12g0109900' => 'osa', 'Peaxi162Scf00003g00219' => 'pax', 'Peaxi162Scf00061g03010' => 'pax', 'Peaxi162Scf00270g00420' => 'pax', 'Peaxi162Scf00342g00925' => 'pax', 'Peaxi162Scf00342g01014' => 'pax', 'Peaxi162Scf00454g00226' => 'pax', 'Peaxi162Scf00683g00137' => 'pax', 'Peaxi162Scf01175g00029' => 'pax', 'PGR031G1443' => 'pgr', 'PGR102G2050' => 'pgr', 'PGR102G2603' => 'pgr', 'PGR119G0641' => 'pgr', 'PGR119G2064' => 'pgr', 'PGR142G2002' => 'pgr', 'PGSC0003DMG400005652' => 'stu', 'PGSC0003DMG400008053' => 'stu', 'PGSC0003DMG400008709' => 'stu', 'PGSC0003DMG400009356' => 'stu', 'PGSC0003DMG400023459' => 'stu', 'PGSC0003DMG400035218' => 'stu', 'PGSC0003DMG400037684' => 'stu', 'Phvul.001G231400' => 'pvu', 'Phvul.004G051700' => 'pvu', 'Phvul.005G134700' => 'pvu', 'Phvul.006G039700' => 'pvu', 'Phvul.006G097600' => 'pvu', 'Phvul.008G234400' => 'pvu', 'Phvul.008G234500' => 'pvu', 'Phvul.009G036100' => 'pvu', 'Phvul.011G009300' => 'pvu', 'Phvul.011G079700' => 'pvu', 'Potri.001G325300' => 'ptr', 'Potri.002G111400' => 'ptr', 'Potri.005G045700' => 'ptr', 'Potri.005G153200' => 'ptr', 'Potri.009G152900' => 'ptr', 'Potri.013G032400' => 'ptr', 'Potri.013G061500' => 'ptr', 'Potri.014G015400' => 'ptr', 'Potri.017G063700' => 'ptr', 'Potri.017G126700' => 'ptr', 'Potri.019G037900' => 'ptr', 'Potri.019G038100' => 'ptr', 'Potri.019G038142' => 'ptr', 'Potri.019G038184' => 'ptr', 'Potri.019G038226' => 'ptr', 'Pp3c14_16050' => 'ppa', 'Pp3c17_16900' => 'ppa', 'Pp3c17_17510' => 'ppa', 'Pp3c17_2200' => 'ppa', 'Prupe.1G533300' => 'ppe', 'Prupe.3G133800' => 'ppe', 'Prupe.3G134100' => 'ppe', 'Prupe.3G310400' => 'ppe', 'Prupe.6G102200' => 'ppe', 'Prupe.6G151600' => 'ppe', 'Prupe.6G336400' => 'ppe', 'Psat1g094760' => 'psa', 'Psat2g041880' => 'psa', 'Psat3g008880' => 'psa', 'Psat3g168960' => 'psa', 'Psat5g014520' => 'psa', 'Psat5g049240' => 'psa', 'Psat5g109080' => 'psa', 'Psat5g113120' => 'psa', 'Psat5g113280' => 'psa', 'Psat5g279000' => 'psa', 'Psat7g225480' => 'psa', 'PSO017G0779' => 'pso', 'PSO017G2164' => 'pso', 'PSO063G3558' => 'pso', 'PSO063G6960' => 'pso', 'PSO170G1854' => 'pso', 'PSO170G2195' => 'pso', 'PSO170G2977' => 'pso', 'PSO210G3124' => 'pso', 'PSO210G3554' => 'pso', 'PSO339G2027' => 'pso', 'PSO339G4300' => 'pso', 'PSO339G6700' => 'pso', 'PSO384G2333' => 'pso', 'PSO478G1148' => 'pso', 'PSO675G5429' => 'pso', 'PSO782G2495' => 'pso', 'QL01p004313' => 'qlo', 'QL01p018552' => 'qlo', 'QL01p022052' => 'qlo', 'QL02p070534' => 'qlo', 'QL03p001068' => 'qlo', 'QL06p023072' => 'qlo', 'QL07p018587' => 'qlo', 'QL09p017982' => 'qlo', 'QL09p038966' => 'qlo', 'QL11p002176' => 'qlo', 'QL11p003934' => 'qlo', 'QL11p039394' => 'qlo', 'RcHm_v2.0_Chr2g0127561' => 'rch', 'RcHm_v2.0_Chr2g0176151' => 'rch', 'RcHm_v2.0_Chr3g0452621' => 'rch', 'RcHm_v2.0_Chr3g0452631' => 'rch', 'RcHm_v2.0_Chr5g0045031' => 'rch', 'RcHm_v2.0_Chr5g0049631' => 'rch', 'RcHm_v2.0_Chr5g0058811' => 'rch', 'RcHm_v2.0_Chr7g0236301' => 'rch', 'Rhsim01G0197600' => 'rsi', 'Rhsim01G0216200' => 'rsi', 'Rhsim03G0037200' => 'rsi', 'Rhsim03G0053100' => 'rsi', 'Rhsim03G0120600' => 'rsi', 'Rhsim06G0071300' => 'rsi', 'Rhsim08G0086400' => 'rsi', 'Rhsim08G0147400' => 'rsi', 'Rhsim09G0151600' => 'rsi', 'Sabra02G0087900' => 'sbr', 'Sabra05G0042000' => 'sbr', 'Sabra13G0032200' => 'sbr', 'Sabra13G0054400' => 'sbr', 'Sabra16G0207800' => 'sbr', 'Sabra17G0057500' => 'sbr', 'Sabra17G0106600' => 'sbr', 'Sabra19G0049100' => 'sbr', 'SalBow3G0482' => 'sbo', 'SalBow3G0739' => 'sbo', 'SalBow3G1497' => 'sbo', 'SalBow4G1863' => 'sbo', 'SalBow4G2177' => 'sbo', 'SalBow4G2347' => 'sbo', 'SalBow4G2351' => 'sbo', 'SalBow6G1148' => 'sbo', 'Sc04g0005040' => 'sci', 'Sc07g0003570' => 'sci', 'Sc07g0005050' => 'sci', 'Sc10g0000760' => 'sci', 'Sc15g0002240' => 'sci', 'Sc15g0002490' => 'sci', 'Sc20g0001860' => 'sci', 'Sed0008791' => 'sed', 'Sed0014398' => 'sed', 'Sed0014831' => 'sed', 'Sed0016533' => 'sed', 'Sed0018103' => 'sed', 'Sed0023110' => 'sed', 'SEGI_00533' => 'sgi', 'SEGI_01910' => 'sgi', 'SEGI_03163' => 'sgi', 'SEGI_08175' => 'sgi', 'SEGI_08624' => 'sgi', 'SEGI_08761' => 'sgi', 'SEGI_09511' => 'sgi', 'SEGI_15044' => 'sgi', 'SEGI_16600' => 'sgi', 'SEGI_16807' => 'sgi', 'SEGI_18533' => 'sgi', 'SEGI_24368' => 'sgi', 'SEGI_24507' => 'sgi', 'SEGI_25462' => 'sgi', 'SEGI_27080' => 'sgi', 'SEGI_30169' => 'sgi', 'SEGI_36933' => 'sgi', 'SEGI_37173' => 'sgi', 'SGA_v2.0_scaffold112G31647' => 'sas', 'SGA_v2.0_scaffold13G06361' => 'sas', 'SGA_v2.0_scaffold147G36386' => 'sas', 'SGA_v2.0_scaffold16G07557' => 'sas', 'SGA_v2.0_scaffold22G09861' => 'sas', 'SGA_v2.0_scaffold253G45169' => 'sas', 'SGA_v2.0_scaffold31G12798' => 'sas', 'SGA_v2.0_scaffold478G52238' => 'sas', 'SGA_v2.0_scaffold5G02740' => 'sas', 'SGA_v2.0_scaffold62G21412' => 'sas', 'SGA_v2.0_scaffold63G21737' => 'sas', 'SGA_v2.0_scaffold72G24088' => 'sas', 'SGA_v2.0_scaffold80G25767' => 'sas', 'SHI09332' => 'shi', 'SHI14934' => 'shi', 'SHI18277' => 'shi', 'SHI20477' => 'shi', 'SHI53450' => 'shi', 'SMO147G0431' => 'smo', 'SMO165G0169' => 'smo', 'SMO171G0094' => 'smo', 'SMO236G0091' => 'smo', 'Solyc01g009190.3' => 'sly', 'Solyc01g056600.2' => 'sly', 'Solyc01g056620.4' => 'sly', 'Solyc02g091460.3' => 'sly', 'Solyc03g118950.3' => 'sly', 'Solyc04g076420.4' => 'sly', 'Solyc05g056100.3' => 'sly', 'Solyc11g069460.2' => 'sly', 'Sopen01g004660' => 'spe', 'Sopen01g020540' => 'spe', 'Sopen02g036080' => 'spe', 'Sopen03g037880' => 'spe', 'Sopen04g030180' => 'spe', 'Sopen05g034510' => 'spe', 'Sopen11g028180' => 'spe', 'Sp1g08290' => 'spa', 'Sp2g16050' => 'spa', 'Sp4g11180' => 'spa', 'Sp5g00720' => 'spa', 'Sp6g36120' => 'spa', 'Sp7g00830' => 'spa', 'TAR362G0737' => 'tar', 'TAR365G0057' => 'tar', 'TAR369G0275' => 'tar', 'TAR374G0184' => 'tar', 'TAR374G0510' => 'tar', 'TAR374G0835' => 'tar', 'TAR376G1189' => 'tar', 'TAR381G0104' => 'tar', 'TAR622G0324' => 'tar', 'TAR622G0420' => 'tar', 'TAR622G0440' => 'tar', 'TAR623G0323' => 'tar', 'TAR625G0735' => 'tar', 'TAR633G1322' => 'tar', 'TAR633G1455' => 'tar', 'TAR636G3218' => 'tar', 'THA.LOC104800602' => 'tha', 'THA.LOC104805960' => 'tha', 'THA.LOC104808246' => 'tha', 'THA.LOC104816793' => 'tha', 'THA.LOC104823780' => 'tha', 'THA.LOC104823988' => 'tha', 'THA.LOC104826366' => 'tha', 'THA.LOC104826735' => 'tha', 'Thecc.04G042200' => 'tca', 'Thecc.04G119400' => 'tca', 'Thecc.04G278000' => 'tca', 'Thecc.05G244900' => 'tca', 'Thecc.05G292100' => 'tca', 'Thecc.08G071900' => 'tca', 'Thecc.09G265700' => 'tca', 'Thecc.09G341500' => 'tca', 'Thhalv10004385m.g' => 'esa', 'Thhalv10006095m.g' => 'esa', 'Thhalv10009442m.g' => 'esa', 'Thhalv10014087m.g' => 'esa', 'Thhalv10016679m.g' => 'esa', 'Thhalv10027807m.g' => 'esa', 'TPR.G11560' => 'tpr', 'TPR.G14384' => 'tpr', 'TPR.G15567' => 'tpr', 'TPR.G24736' => 'tpr', 'TPR.G29870' => 'tpr', 'TPR.G30878' => 'tpr', 'TPR.G3467' => 'tpr', 'TPR.G36395' => 'tpr', 'TPR.G37885' => 'tpr', 'TPR.G39533' => 'tpr', 'TPR.G39900' => 'tpr', 'TPR.G6365' => 'tpr', 'TPR.G6964' => 'tpr', 'TWI09G0151' => 'twi', 'TWI09G0226' => 'twi', 'TWI09G1425' => 'twi', 'TWI12G0939' => 'twi', 'TWI12G1101' => 'twi', 'TWI18G1238' => 'twi', 'TWI31G0535' => 'twi', 'TWI34G2036' => 'twi', 'TWI56G0818' => 'twi', 'TWI60G0311' => 'twi', 'TWI60G0951' => 'twi', 'TWI75G0913' => 'twi', 'TWI79G0127' => 'twi', 'TWI79G1772' => 'twi', 'unitig_21.g20309' => 'ugi', 'unitig_22.g6661' => 'ugi', 'unitig_37.g12895' => 'ugi', 'unitig_8.g3303' => 'ugi', 'unitig_8.g3672' => 'ugi', 'vmacro03199' => 'vma', 'vmacro04871' => 'vma', 'vmacro07072' => 'vma', 'vmacro07555' => 'vma', 'vmacro07556' => 'vma', 'vmacro12778' => 'vma', 'vmacro14435' => 'vma', 'vmacro17597' => 'vma', 'vmacro18048' => 'vma', 'vmacro19665' => 'vma', 'vmacro21343' => 'vma', 'vmacro22550' => 'vma', 'vmacro22900' => 'vma', 'VMungo0464G0567' => 'vmu', 'VMungo0540G1399' => 'vmu', 'VMungo0540G2129' => 'vmu', 'VMungo0647G1718' => 'vmu', 'VMungo1080G0093' => 'vmu', 'VMungo1127G1296' => 'vmu', 'VMungo1246G0001' => 'vmu', 'VMungo1309G0330' => 'vmu', 'Zm00001eb042470' => 'zma', 'Zm00001eb045620' => 'zma', 'Zm00001eb094000' => 'zma', 'Zm00001eb102530' => 'zma', 'Zm00001eb151900' => 'zma', 'Zm00001eb221610' => 'zma', 'Zm00001eb332140' => 'zma', 'Zm00001eb418210' => 'zma' ) $gf_id = 'HOM05D000611' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000611' ) $data_identifier = 'HOM05D000611' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 25, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 11, 'cqu' => (int) 15, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 11, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 15, 'eca' => (int) 8, 'bvu' => (int) 15, 'egr' => (int) 10, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 14, 'lonja' => (int) 11, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 8, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 18, 'sas' => (int) 13, 'shi' => (int) 5, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 13, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1